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You may also take a look at the source code.
The networks in this dataset can be loaded directly from graph-tool with:
import graph_tool.all as gt
g = gt.collection.ns["mist/ppi_fission_yeast"]
(and likewise for the other networks available.)

mist — MIST protein interaction database (2020)

Description

The Molecular Interaction Search Tool (MIST) is a comprehensive resource of molecular interactions, assembled from severla primary sources. MIST currently supports several species, including:

  1. Homo sapiens (Human)
  2. Drosophila melanogaster (Fly)
  3. Mus musculus (Mouse)
  4. Caenorhabditis elegans (Worm)
  5. Rattus norvegicus (Rat)
  6. Saccharomyces cerevisiae (Baker's yeast)
  7. Schizosaccharomyces pombe (Fission yeast)
  8. Danio rerio (Zebrafish)
  9. Xenopus laevis (African clawed frog)
  10. Xenopus tropicalis (Western clawed frog)

The database contains four kinds of interactions:

  1. Protein-protein interaction (PPI): “PPI” refers to physical interactions between two or more proteins.
  2. Interologs (PPI): Interactions predicted based on PPI data obtained for orthologous proteins.
  3. Genetic Interactions: Indicate that the effects of mutations in one gene can be modified by mutation of another gene.
  4. Genetic Interologs: Interactions predicted based on genetic interaction data obtained for orthologous proteins
Tags
Biological Protein interactions Unweighted
Citation
  • Yanhui Hu, Arunachalam Vinayagam, Ankita Nand, Aram Comjean, Verena Chung, Tong Hao, Stephanie E Mohr, and Norbert Perrimon, “Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data.” Nucleic Acids Res, 46, D1, Pp. D567-D574 (2017), http://dx.doi.org/10.1093/nar/gkx1116
Upstream URL OK
https://fgrtools.hms.harvard.edu/MIST/index.jsp
Networks
Tip: click on the table header to sort the list. Hover your mouse over it to obtain a legend.
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv
ppi_fission_yeast 3,705 15,167 8.19 26.07 40.57 21.00 -0.24 0.03 9 0.97 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 150 KiB 232 KiB 225 KiB 212 KiB
ppi_yeast 7,272 165,705 45.57 129.89 202.31 4.13 -0.18 0.06 6 1.00 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 1.1 MiB 1.8 MiB 1.7 MiB 1.7 MiB
ppi_worm 8,874 42,541 9.59 28.54 82.41 107.49 -0.11 0.11 13 0.97 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 388 KiB 569 KiB 556 KiB 525 KiB
ppi_fly 11,352 135,037 23.79 45.80 104.49 90.14 -0.15 0.08 10 1.00 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 967 KiB 1.5 MiB 1.4 MiB 1.4 MiB
ppi_zebrafish 452 458 2.03 5.39 4.79 46.61 -0.26 0.02 9 0.44 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 13 KiB 17 KiB 16 KiB 15 KiB
ppi_western_clawed_frog 50 41 1.64 3.06 1.00 0.03 -0.49 0.00 2 0.46 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2 KiB 3 KiB 2 KiB 2 KiB
ppi_human 27,594 526,471 38.16 91.50 238.56 8.26 -0.08 0.06 8 1.00 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 4.3 MiB 6.6 MiB 6.3 MiB 6.4 MiB
ppi_mouse 18,838 75,110 7.97 44.25 72.44 27.72 -0.10 0.01 11 0.99 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 795 KiB 1.2 MiB 1.1 MiB 1.1 MiB
ppi_rat 7,050 14,969 4.25 19.09 30.03 39.03 -0.20 0.01 12 0.96 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 229 KiB 320 KiB 308 KiB 283 KiB
ppi_interolog_fission_yeast 21,912 266,887 24.36 82.13 282.81 1.58 -0.09 0.16 5 0.18 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 3.0 MiB 4.6 MiB 4.2 MiB 4.6 MiB
ppi_interolog_yeast 35,355 958,936 54.25 125.44 210.83 2.69 -0.20 0.08 5 0.14 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 8.0 MiB 14.2 MiB 12.7 MiB 13.9 MiB
ppi_interolog_worm 46,404 643,319 27.73 82.42 322.00 3.93 -0.02 0.12 5 0.16 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 6.5 MiB 10.0 MiB 9.1 MiB 10.0 MiB
ppi_interolog_fly 58,896 1,180,954 40.10 85.40 352.42 3.90 0.05 0.12 6 0.13 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 10.1 MiB 17.5 MiB 15.4 MiB 16.7 MiB
ppi_interolog_zebrafish 17,845 789,779 88.52 170.12 374.45 2.95 -0.09 0.10 6 0.94 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 8.0 MiB 12.3 MiB 11.3 MiB 12.4 MiB
ppi_interolog_western_clawed_frog 13,271 550,375 82.94 147.96 314.26 2.90 -0.09 0.10 7 1.00 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 5.8 MiB 8.9 MiB 8.1 MiB 8.8 MiB
ppi_interolog_human 109,706 2,864,523 52.22 102.93 252.64 5.34 -0.10 0.07 7 0.15 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 26.6 MiB 42.8 MiB 38.9 MiB 42.7 MiB
ppi_interolog_mouse 71,318 933,081 26.17 92.61 342.00 5.18 -0.11 0.08 6 0.24 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 10.1 MiB 15.1 MiB 13.9 MiB 14.9 MiB
ppi_interolog_rat 35,093 747,063 42.58 114.96 334.60 3.68 -0.07 0.09 7 0.49 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 7.9 MiB 12.2 MiB 11.1 MiB 12.1 MiB
genetic_fission_yeast 3,563 52,013 29.20 55.04 108.62 9.23 -0.28 0.09 9 0.99 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 244 KiB 521 KiB 507 KiB 468 KiB
genetic_yeast 5,936 442,019 148.93 172.55 336.99 11.72 -0.08 0.14 8 1.00 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 1.7 MiB 3.8 MiB 3.7 MiB 3.5 MiB
genetic_worm 3,178 8,011 5.04 17.50 29.90 42.99 -0.20 0.03 13 0.96 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 83 KiB 129 KiB 128 KiB 115 KiB
genetic_fly 4,209 13,882 6.60 15.32 36.04 19.19 -0.10 0.08 12 0.96 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 188 KiB 274 KiB 265 KiB 255 KiB
genetic_zebrafish 66 65 1.97 1.73 2.05 9.15 -0.20 0.15 5 0.32 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 3 KiB 4 KiB 3 KiB 3 KiB
genetic_human 3,751 9,034 4.82 19.83 35.45 141.13 -0.16 0.04 11 0.95 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 100 KiB 157 KiB 147 KiB 134 KiB
genetic_mouse 368 357 1.94 3.06 2.83 270.87 -0.18 0.05 17 0.58 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 11 KiB 14 KiB 14 KiB 12 KiB
genetic_rat 39 24 1.23 0.58 1.00 0.02 -0.33 0.00 2 0.10 Undirected Bipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2 KiB 3 KiB 2 KiB 2 KiB
genetic_interolog_yeast 33,399 2,028,834 121.49 139.71 300.98 4.95 -0.07 0.17 7 0.14 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 11.3 MiB 26.2 MiB 21.6 MiB 22.9 MiB
genetic_interolog_worm 23,826 285,752 23.99 66.26 257.37 248.65 0.17 0.16 8 0.21 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2.0 MiB 3.9 MiB 3.4 MiB 3.5 MiB
genetic_interolog_fly 27,105 334,495 24.68 69.32 286.14 10.98 0.23 0.18 8 0.19 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2.7 MiB 5.0 MiB 4.3 MiB 4.6 MiB
genetic_interolog_zebrafish 8,699 317,814 73.07 131.92 317.11 17.76 -0.00 0.17 8 0.96 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2.1 MiB 4.4 MiB 3.6 MiB 3.8 MiB
genetic_interolog_western_clawed_frog 6,618 185,239 55.98 97.44 229.63 11.09 -0.02 0.16 8 1.00 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 1.3 MiB 2.6 MiB 2.2 MiB 2.3 MiB
genetic_interolog_human 27,707 363,570 26.24 80.04 310.02 25.36 0.11 0.17 10 0.24 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2.6 MiB 5.2 MiB 4.4 MiB 4.6 MiB
genetic_interolog_mouse 9,815 318,298 64.86 127.09 315.70 11.00 -0.03 0.17 8 0.82 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 2.3 MiB 4.3 MiB 3.6 MiB 3.9 MiB
genetic_interolog_rat 7,946 250,780 63.12 114.43 272.56 18.54 -0.03 0.16 10 0.98 Undirected Unipartite gene tax_id MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment 1.7 MiB 3.5 MiB 2.9 MiB 3.0 MiB
Ridiculograms
ppi_fission_yeast drawing
ppi_fission_yeast
ppi_yeast drawing
ppi_yeast
ppi_worm drawing
ppi_worm
ppi_fly drawing
ppi_fly
ppi_zebrafish drawing
ppi_zebrafish
ppi_western_clawed_frog drawing
ppi_western_clawed_frog
ppi_human drawing
ppi_human
ppi_mouse drawing
ppi_mouse
ppi_rat drawing
ppi_rat
ppi_interolog_fission_yeast drawing
ppi_interolog_fission_yeast
ppi_interolog_yeast drawing
ppi_interolog_yeast
ppi_interolog_worm drawing
ppi_interolog_worm
ppi_interolog_fly drawing
ppi_interolog_fly
ppi_interolog_zebrafish drawing
ppi_interolog_zebrafish
ppi_interolog_western_clawed_frog drawing
ppi_interolog_western_clawed_frog
ppi_interolog_human drawing
ppi_interolog_human
ppi_interolog_mouse drawing
ppi_interolog_mouse
ppi_interolog_rat drawing
ppi_interolog_rat
genetic_fission_yeast drawing
genetic_fission_yeast
genetic_yeast drawing
genetic_yeast
genetic_worm drawing
genetic_worm
genetic_fly drawing
genetic_fly
genetic_zebrafish drawing
genetic_zebrafish
genetic_human drawing
genetic_human
genetic_mouse drawing
genetic_mouse
genetic_rat drawing
genetic_rat
genetic_interolog_yeast drawing
genetic_interolog_yeast
genetic_interolog_worm drawing
genetic_interolog_worm
genetic_interolog_fly drawing
genetic_interolog_fly
genetic_interolog_zebrafish drawing
genetic_interolog_zebrafish
genetic_interolog_western_clawed_frog drawing
genetic_interolog_western_clawed_frog
genetic_interolog_human drawing
genetic_interolog_human
genetic_interolog_mouse drawing
genetic_interolog_mouse
genetic_interolog_rat drawing
genetic_interolog_rat