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History of adjnoun

The changes to the source code of this entry in the repository, newest first, each with the differences it made to the entry's files. They are also listed on GitLab.

[entries] Add the date when each entry was added, and remove icon_hash by Tiago de Paula Peixoto beff7c9
The dates are those of the commits that first added the entries' files
(2020-08-11 for the entries of the initial commit); renamed entries keep
the date of their first name.

Changed: none
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 516523c..2784150 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -28,7 +28,7 @@ The network has the following properties:
 tags = ['Informational', 'Language', 'Unweighted']
 url = 'http://www-personal.umich.edu/~mejn/netdata/adjnoun.zip'
 citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'https://doi.org/10.1103/PhysRevE.74.036104')]
-icon_hash = '56a85c8e26855e083a2f78dc'
+date_added = '2020-08-11'
 upstream_license = None
 upstream_prefix = 'http://www-personal.umich.edu/~mejn/netdata'
 files = [('adjnoun.zip:adjnoun.gml', None, 'gml')]
[entries] Prefix the properties in the descriptions with (Node), (Edge) or (Graph) by Tiago de Paula Peixoto bc3dbbd
The lists of properties at the end of the descriptions marked edge
properties with "Edge" but left node properties unmarked, or grouped
them in "Nodes: `a`, ...; `b`, ..." items, so the kind of a property
was often unclear. Every item now starts with (Node), (Edge) or (Graph),
followed by the property names, a colon and the explanation, one item
per property or group of properties; qualifications (kinds of nodes,
networks) follow the names in parentheses. Properties that were only
named got a short explanation, and a few items that named the wrong
kind of property were corrected.
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 9951bf6..516523c 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -23,7 +23,8 @@ description = """A network of adjacencies between common adjectives and nouns in
 
 The network has the following properties:
 
-- Nodes: `label`, the word; `value`, the word class (0 for adjectives, 1 for nouns)."""
+- (Node) `label`: the word.
+- (Node) `value`: the word class (0 for adjectives, 1 for nouns)."""
 tags = ['Informational', 'Language', 'Unweighted']
 url = 'http://www-personal.umich.edu/~mejn/netdata/adjnoun.zip'
 citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'https://doi.org/10.1103/PhysRevE.74.036104')]
[entries] Remove unneeded code from the entries by Tiago de Paula Peixoto 2c69f19
Unneeded "global files" statements, unused imports and variables,
f-strings without placeholders, duplicate keys in foodweb_little_rock
(keeping the order and the values used), and the second definition of
get_lines() in twitter_higgs. Nothing changes in the networks or
descriptions.

Changed: none
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index b14158f..9951bf6 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -40,7 +40,6 @@ def fetch_upstream(force=False):
 @coerce_props()
 @annotate()
 def parse(alts=None):
-    global files
     name = __name__.split(".")[-1]
     for fnames, alt, fmt in files:
         if alts is not None and alt not in alts:
[entries] Fix parse bugs and improve the metadata of existing entries by Tiago de Paula Peixoto c996a0e
From a review of the dataset descriptions against the upstream sources
and papers, and from user reports:

- parse fixes (wrong edge direction or directedness, shifted or
  misnamed properties, merged node identities, duplicated or missing
  edges and nodes, wrong types), e.g. arxiv_citation (the HepTh dates
  were a copy of the HepPh ones; now from the KDD Cup 2003 data),
  eu_procurements, foursquare_global, hiv_transmission, genetic_multiplex,
  gnutella (adds the 05 snapshot), roadnet, macaque_neural, python_dependency
- descriptions rewritten from the upstream sources, documenting every
  property
- corrected titles, citations and DOIs, licences (ustream_license typo,
  the data's own terms), tags and ICON ids
- url lists for entries with several sources or dataset pages
- SocioPatterns entries moved to the site's new data location, with the
  daily networks of sp_infectious and sp_primary_school
- the Michael Fire entries marked as orphans (served from the mirror)
- redundant type forcings removed after the graph-tool coercion fixes
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 97a9863..b14158f 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -19,13 +19,16 @@
 from .. import *
 
 title = "Word adjacencies of David Copperfield"
-description = """A network of word adjacencies of common adjectives and nouns in the novel \"David Copperfield\" by Charles Dickens.[^icon]
-[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
+description = """A network of adjacencies between common adjectives and nouns in the novel "David Copperfield" by Charles Dickens, compiled by M. E. J. Newman. Nodes are the 112 most commonly occurring adjectives and nouns in the book, and an undirected edge connects two words if they occur in adjacent positions anywhere in the text. Since in English adjectives typically precede nouns, the network is approximately bipartite, and it has been used as a test case for community detection and for detecting disassortative structure.
+
+The network has the following properties:
+
+- Nodes: `label`, the word; `value`, the word class (0 for adjectives, 1 for nouns)."""
 tags = ['Informational', 'Language', 'Unweighted']
 url = 'http://www-personal.umich.edu/~mejn/netdata/adjnoun.zip'
 citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'https://doi.org/10.1103/PhysRevE.74.036104')]
 icon_hash = '56a85c8e26855e083a2f78dc'
-ustream_license = None
+upstream_license = None
 upstream_prefix = 'http://www-personal.umich.edu/~mejn/netdata'
 files = [('adjnoun.zip:adjnoun.gml', None, 'gml')]
 
Update copyright information by Tiago de Paula Peixoto 73a4f0d
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 75b98ad..97a9863 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2026 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free
Update copyright information by Tiago de Paula Peixoto 3d288ea
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 8dd866e..75b98ad 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free
Update copyright information by Tiago de Paula Peixoto 8d005ae
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 6dec5d9..8dd866e 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free
Update copyright info by Tiago de Paula Peixoto db2efcc
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index db229a5..6dec5d9 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free
Update citations to use DOIs by Tiago de Paula Peixoto e878874
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 4c47b57..db229a5 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -23,7 +23,7 @@ description = """A network of word adjacencies of common adjectives and nouns in
 [^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
 tags = ['Informational', 'Language', 'Unweighted']
 url = 'http://www-personal.umich.edu/~mejn/netdata/adjnoun.zip'
-citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'http://arxiv.org/abs/physics/0605087')]
+citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'https://doi.org/10.1103/PhysRevE.74.036104')]
 icon_hash = '56a85c8e26855e083a2f78dc'
 ustream_license = None
 upstream_prefix = 'http://www-personal.umich.edu/~mejn/netdata'
Change license from GPLv3 to AGPLv3 by Tiago de Paula Peixoto d754be5
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 2c17786..4c47b57 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -3,18 +3,18 @@
 #
 # Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
+# This program is free software: you can redistribute it and/or modify it under
+# the terms of the GNU Affero General Public License as published by the Free
+# Software Foundation, either version 3 of the License, or (at your option) any
+# later version.
 #
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU Affero General Public License for more
+# details.
 #
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+# You should have received a copy of the GNU Affero General Public License along
+# with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 from .. import *
 
Add explicit attribution to descriptions obtained from ICON by Tiago de Paula Peixoto 1645314
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
index 19e4720..2c17786 100644
--- a/entries/adjnoun/__init__.py
+++ b/entries/adjnoun/__init__.py
@@ -19,7 +19,8 @@
 from .. import *
 
 title = "Word adjacencies of David Copperfield"
-description = "A network of word adjacencies of common adjectives and nouns in the novel \"David Copperfield\" by Charles Dickens."
+description = """A network of word adjacencies of common adjectives and nouns in the novel \"David Copperfield\" by Charles Dickens.[^icon]
+[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
 tags = ['Informational', 'Language', 'Unweighted']
 url = 'http://www-personal.umich.edu/~mejn/netdata/adjnoun.zip'
 citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'http://arxiv.org/abs/physics/0605087')]
Initial commit by Tiago de Paula Peixoto cc85872
diff --git a/entries/adjnoun/__init__.py b/entries/adjnoun/__init__.py
new file mode 100644
index 0000000..19e4720
--- /dev/null
+++ b/entries/adjnoun/__init__.py
@@ -0,0 +1,49 @@
+#! /usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+from .. import *
+
+title = "Word adjacencies of David Copperfield"
+description = "A network of word adjacencies of common adjectives and nouns in the novel \"David Copperfield\" by Charles Dickens."
+tags = ['Informational', 'Language', 'Unweighted']
+url = 'http://www-personal.umich.edu/~mejn/netdata/adjnoun.zip'
+citation = [('M.E.J. Newman, "Finding community structure in networks using the eigenvectors of matrices." Phys. Rev. E 74, 036104 (2006).', 'http://arxiv.org/abs/physics/0605087')]
+icon_hash = '56a85c8e26855e083a2f78dc'
+ustream_license = None
+upstream_prefix = 'http://www-personal.umich.edu/~mejn/netdata'
+files = [('adjnoun.zip:adjnoun.gml', None, 'gml')]
+
+def fetch_upstream(force=False):
+    return fetch_upstream_files(__name__.split(".")[-1], upstream_prefix, files,
+                                force)
+
+@cache_network()
+@coerce_props()
+@annotate()
+def parse(alts=None):
+    global files
+    name = __name__.split(".")[-1]
+    for fnames, alt, fmt in files:
+        if alts is not None and alt not in alts:
+            continue
+        if isinstance(fnames, str):
+            fnames = [fnames]
+        with ExitStack() as stack:
+            fs = [stack.enter_context(open_upstream_file(name, fn, "rb")) for fn in fnames]
+            g = parse_graph(fs, fmt, directed=False)
+        yield alt, g