History of baseball
The changes to the source code of this entry in the repository, newest first, each with the differences it made to the entry's files. They are also listed on GitLab.
[entries] Add the date when each entry was added, and remove icon_hash beff7c9
The dates are those of the commits that first added the entries' files (2020-08-11 for the entries of the initial commit); renamed entries keep the date of their first name. Changed: none
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index ba20a30..0c0c229 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -35,7 +35,7 @@ tags = ['Social', 'Offline', 'Weighted', 'Projection']
url = ['https://sites.google.com/site/ucinetsoftware/datasets/covert-networks/baseball-steroid-use',
'http://orgnet.com/steroids.html']
citation = [('V. Krebs, "The Spread of Steroids in Baseball."', 'http://orgnet.com/steroids.html')]
-icon_hash = '59daeba7ee01e9ab21aadc6f'
+date_added = '2020-08-11'
# The files are no longer available from the UCINET site (its file
# attachments were lost when the site was migrated); the same archives are
# obtained from the public Google Drive folder of the UCINET datasets.
[entries] Prefix the properties in the descriptions with (Node), (Edge) or (Graph) bc3dbbd
The lists of properties at the end of the descriptions marked edge properties with "Edge" but left node properties unmarked, or grouped them in "Nodes: `a`, ...; `b`, ..." items, so the kind of a property was often unclear. Every item now starts with (Node), (Edge) or (Graph), followed by the property names, a colon and the explanation, one item per property or group of properties; qualifications (kinds of nodes, networks) follow the names in parentheses. Properties that were only named got a short explanation, and a few items that named the wrong kind of property were corrected.
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index 4bd053f..ba20a30 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -28,8 +28,9 @@ description = """Networks of steroid use among Major League Baseball players, co
The networks have the following properties:
-- Nodes: `name`, the name of the player or provider; `is_provider` (only in `user-provider`), whether the node is a provider (otherwise a player).
-- Edges: `weight` (only in `player-player`), as described above."""
+- (Node) `name`: the name of the player or provider.
+- (Node) `is_provider` (only in `user-provider`): whether the node is a provider (otherwise a player).
+- (Edge) `weight` (only in `player-player`): as described above."""
tags = ['Social', 'Offline', 'Weighted', 'Projection']
url = ['https://sites.google.com/site/ucinetsoftware/datasets/covert-networks/baseball-steroid-use',
'http://orgnet.com/steroids.html']
[entries] Remove unneeded code from the entries 2c69f19
Unneeded "global files" statements, unused imports and variables, f-strings without placeholders, duplicate keys in foodweb_little_rock (keeping the order and the values used), and the second definition of get_lines() in twitter_higgs. Nothing changes in the networks or descriptions. Changed: none
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index 003e85f..4bd053f 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -49,7 +49,6 @@ def fetch_upstream(force=False):
@coerce_props()
@annotate()
def parse(alts=None):
- global files
name = __name__.split(".")[-1]
for fnames, alt, fmt in files:
if alts is not None and alt not in alts:
[entries] Fix parse bugs and improve the metadata of existing entries c996a0e
From a review of the dataset descriptions against the upstream sources and papers, and from user reports: - parse fixes (wrong edge direction or directedness, shifted or misnamed properties, merged node identities, duplicated or missing edges and nodes, wrong types), e.g. arxiv_citation (the HepTh dates were a copy of the HepPh ones; now from the KDD Cup 2003 data), eu_procurements, foursquare_global, hiv_transmission, genetic_multiplex, gnutella (adds the 05 snapshot), roadnet, macaque_neural, python_dependency - descriptions rewritten from the upstream sources, documenting every property - corrected titles, citations and DOIs, licences (ustream_license typo, the data's own terms), tags and ICON ids - url lists for entries with several sources or dataset pages - SocioPatterns entries moved to the site's new data location, with the daily networks of sp_infectious and sp_primary_school - the Michael Fire entries marked as orphans (served from the mirror) - redundant type forcings removed after the graph-tool coercion fixes
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index a5f7adf..003e85f 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -17,16 +17,29 @@
# with this program. If not, see <http://www.gnu.org/licenses/>.
from .. import *
+import csv
+import io
title = "Baseball steroid use (2008)"
-description = """Two networks representing steroid use among baseball players. First, a bipartite network of players and their steroid providers (of illegal performance-enhancing substances). Second, a one-mode projection of players, which are linked if they have a common supplier.[^icon]
-[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
+description = """Networks of steroid use among Major League Baseball players, compiled by V. Krebs from the Mitchell Report (2007), the independent investigation into the use of steroids and other illegal performance-enhancing substances in Major League Baseball. There are two undirected networks:
+
+- `user-provider`: a bipartite network of 72 players and the 12 providers (individuals, clinics and pharmacies) that the report identified as their suppliers of steroids and other illegal performance-enhancing substances. An edge connects a player to each of his providers.
+- `player-player`: the one-mode projection of the bipartite network onto the players, in which two players are connected if they share at least one provider. The edge `weight` is the number of shared providers. Each player also has a self-loop whose `weight` is his number of providers.
+
+The networks have the following properties:
+
+- Nodes: `name`, the name of the player or provider; `is_provider` (only in `user-provider`), whether the node is a provider (otherwise a player).
+- Edges: `weight` (only in `player-player`), as described above."""
tags = ['Social', 'Offline', 'Weighted', 'Projection']
-url = 'http://orgnet.com/steroids.html'
+url = ['https://sites.google.com/site/ucinetsoftware/datasets/covert-networks/baseball-steroid-use',
+ 'http://orgnet.com/steroids.html']
citation = [('V. Krebs, "The Spread of Steroids in Baseball."', 'http://orgnet.com/steroids.html')]
icon_hash = '59daeba7ee01e9ab21aadc6f'
-upstream_prefix = 'https://28915467-a-62cb3a1a-s-sites.googlegroups.com/site/ucinetsoftware/datasets/covert-networks/baseballsteroiduse'
-files = [('Baseball%20Steroid%20Use%20CSV.zip:CSV/BASEBALL_1M.csv', 'player-player', 'csv_matrix'), ('Baseball%20Steroid%20Use%20CSV.zip:CSV/BASEBALL_2M.csv', 'user-provider', 'csv_matrix')]
+# The files are no longer available from the UCINET site (its file
+# attachments were lost when the site was migrated); the same archives are
+# obtained from the public Google Drive folder of the UCINET datasets.
+upstream_prefix = 'gdrive://'
+files = [('1hH_l27m6lsVH1-3gnjauHOFo1qwzTG8p:zip:CSV/BASEBALL_1M.csv', 'player-player', 'csv_matrix'), ('1hH_l27m6lsVH1-3gnjauHOFo1qwzTG8p:zip:CSV/BASEBALL_2M.csv', 'user-provider', 'csv_matrix')]
def fetch_upstream(force=False):
return fetch_upstream_files(__name__.split(".")[-1], upstream_prefix, files,
@@ -46,4 +59,10 @@ def parse(alts=None):
with ExitStack() as stack:
fs = [stack.enter_context(open_upstream_file(name, fn, "rb")) for fn in fnames]
g = parse_graph(fs, fmt, directed=False)
+ if alt == "user-provider":
+ # column labels of the two-mode matrix are the first vertices
+ with open_upstream_file(name, fnames[0], "rb") as f:
+ header = next(csv.reader(io.TextIOWrapper(f, "utf-8-sig")))
+ ncols = len(header) - 1
+ g.vp.is_provider = g.new_vp("bool", vals=g.get_vertices() < ncols)
yield alt, g
Update copyright information 73a4f0d
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index 6c91cd5..a5f7adf 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2026 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Update copyright information 3d288ea
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index e94f9fd..6c91cd5 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Update copyright information 8d005ae
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index 8c2da4c..e94f9fd 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Fix description string quotes 3fc2e4d
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index 9debf31..8c2da4c 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -23,7 +23,7 @@ description = """Two networks representing steroid use among baseball players. F
[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
tags = ['Social', 'Offline', 'Weighted', 'Projection']
url = 'http://orgnet.com/steroids.html'
-citation = [('V. Krebs, "The Spread of Steroids in Baseball." http://orgnet.com/steroids.html (2008)', 'http://orgnet.com/steroids.html')]
+citation = [('V. Krebs, "The Spread of Steroids in Baseball."', 'http://orgnet.com/steroids.html')]
icon_hash = '59daeba7ee01e9ab21aadc6f'
upstream_prefix = 'https://28915467-a-62cb3a1a-s-sites.googlegroups.com/site/ucinetsoftware/datasets/covert-networks/baseballsteroiduse'
files = [('Baseball%20Steroid%20Use%20CSV.zip:CSV/BASEBALL_1M.csv', 'player-player', 'csv_matrix'), ('Baseball%20Steroid%20Use%20CSV.zip:CSV/BASEBALL_2M.csv', 'user-provider', 'csv_matrix')]
Update copyright info db2efcc
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index b293912..9debf31 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Change license from GPLv3 to AGPLv3 d754be5
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index 837c185..b293912 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -3,18 +3,18 @@
#
# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
+# This program is free software: you can redistribute it and/or modify it under
+# the terms of the GNU Affero General Public License as published by the Free
+# Software Foundation, either version 3 of the License, or (at your option) any
+# later version.
#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
+# details.
#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
+# You should have received a copy of the GNU Affero General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
from .. import *
Add explicit attribution to descriptions obtained from ICON 1645314
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
index aa159bd..837c185 100644
--- a/entries/baseball/__init__.py
+++ b/entries/baseball/__init__.py
@@ -19,7 +19,8 @@
from .. import *
title = "Baseball steroid use (2008)"
-description = "Two networks representing steroid use among baseball players. First, a bipartite network of players and their steroid providers (of illegal performance-enhancing substances). Second, a one-mode projection of players, which are linked if they have a common supplier."
+description = """Two networks representing steroid use among baseball players. First, a bipartite network of players and their steroid providers (of illegal performance-enhancing substances). Second, a one-mode projection of players, which are linked if they have a common supplier.[^icon]
+[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
tags = ['Social', 'Offline', 'Weighted', 'Projection']
url = 'http://orgnet.com/steroids.html'
citation = [('V. Krebs, "The Spread of Steroids in Baseball." http://orgnet.com/steroids.html (2008)', 'http://orgnet.com/steroids.html')]
Initial commit cc85872
diff --git a/entries/baseball/__init__.py b/entries/baseball/__init__.py
new file mode 100644
index 0000000..aa159bd
--- /dev/null
+++ b/entries/baseball/__init__.py
@@ -0,0 +1,48 @@
+#! /usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+from .. import *
+
+title = "Baseball steroid use (2008)"
+description = "Two networks representing steroid use among baseball players. First, a bipartite network of players and their steroid providers (of illegal performance-enhancing substances). Second, a one-mode projection of players, which are linked if they have a common supplier."
+tags = ['Social', 'Offline', 'Weighted', 'Projection']
+url = 'http://orgnet.com/steroids.html'
+citation = [('V. Krebs, "The Spread of Steroids in Baseball." http://orgnet.com/steroids.html (2008)', 'http://orgnet.com/steroids.html')]
+icon_hash = '59daeba7ee01e9ab21aadc6f'
+upstream_prefix = 'https://28915467-a-62cb3a1a-s-sites.googlegroups.com/site/ucinetsoftware/datasets/covert-networks/baseballsteroiduse'
+files = [('Baseball%20Steroid%20Use%20CSV.zip:CSV/BASEBALL_1M.csv', 'player-player', 'csv_matrix'), ('Baseball%20Steroid%20Use%20CSV.zip:CSV/BASEBALL_2M.csv', 'user-provider', 'csv_matrix')]
+
+def fetch_upstream(force=False):
+ return fetch_upstream_files(__name__.split(".")[-1], upstream_prefix, files,
+ force)
+
+@cache_network()
+@coerce_props()
+@annotate()
+def parse(alts=None):
+ global files
+ name = __name__.split(".")[-1]
+ for fnames, alt, fmt in files:
+ if alts is not None and alt not in alts:
+ continue
+ if isinstance(fnames, str):
+ fnames = [fnames]
+ with ExitStack() as stack:
+ fs = [stack.enter_context(open_upstream_file(name, fn, "rb")) for fn in fnames]
+ g = parse_graph(fs, fmt, directed=False)
+ yield alt, g