History of ugandan_village
The changes to the source code of this entry in the repository, newest first, each with the differences it made to the entry's files. They are also listed on GitLab.
[entries] Add the date when each entry was added, and remove icon_hash beff7c9
The dates are those of the commits that first added the entries' files (2020-08-11 for the entries of the initial commit); renamed entries keep the date of their first name. Changed: none
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 58cd674..88173ba 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -32,7 +32,7 @@ The networks have the following properties:
tags = ['Social', 'Offline', 'Unweighted', 'Multilayer']
url = 'https://www.repository.cam.ac.uk/handle/1810/270256?show=full'
citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'https://doi.org/10.1073/pnas.1700166114')]
-icon_hash = '5b2c7544eb70bccf32add88d'
+date_added = '2020-08-11'
upstream_license = None
upstream_prefix = 'https://www.repository.cam.ac.uk/bitstream/handle/1810/270256'
files = \
[entries] Prefix the properties in the descriptions with (Node), (Edge) or (Graph) bc3dbbd
The lists of properties at the end of the descriptions marked edge properties with "Edge" but left node properties unmarked, or grouped them in "Nodes: `a`, ...; `b`, ..." items, so the kind of a property was often unclear. Every item now starts with (Node), (Edge) or (Graph), followed by the property names, a colon and the explanation, one item per property or group of properties; qualifications (kinds of nodes, networks) follow the names in parentheses. Properties that were only named got a short explanation, and a few items that named the wrong kind of property were corrected.
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 69fa236..58cd674 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -28,7 +28,7 @@ Nodes are households and edges are undirected. Some pairs of households are conn
The networks have the following properties:
-- `name`: the anonymized household identifier."""
+- (Node) `name`: the anonymized household identifier."""
tags = ['Social', 'Offline', 'Unweighted', 'Multilayer']
url = 'https://www.repository.cam.ac.uk/handle/1810/270256?show=full'
citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'https://doi.org/10.1073/pnas.1700166114')]
[entries] Remove unneeded code from the entries 2c69f19
Unneeded "global files" statements, unused imports and variables, f-strings without placeholders, duplicate keys in foodweb_little_rock (keeping the order and the values used), and the second definition of get_lines() in twitter_higgs. Nothing changes in the networks or descriptions. Changed: none
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 72866e8..69fa236 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -47,7 +47,6 @@ def fetch_upstream(force=False):
@coerce_props()
@annotate()
def parse(alts=None):
- global files
name = __name__.split(".")[-1]
for fnames, alt, fmt in files:
if alts is not None and alt not in alts:
[entries] Fix parse bugs and improve the metadata of existing entries c996a0e
From a review of the dataset descriptions against the upstream sources and papers, and from user reports: - parse fixes (wrong edge direction or directedness, shifted or misnamed properties, merged node identities, duplicated or missing edges and nodes, wrong types), e.g. arxiv_citation (the HepTh dates were a copy of the HepPh ones; now from the KDD Cup 2003 data), eu_procurements, foursquare_global, hiv_transmission, genetic_multiplex, gnutella (adds the 05 snapshot), roadnet, macaque_neural, python_dependency - descriptions rewritten from the upstream sources, documenting every property - corrected titles, citations and DOIs, licences (ustream_license typo, the data's own terms), tags and ICON ids - url lists for entries with several sources or dataset pages - SocioPatterns entries moved to the site's new data location, with the daily networks of sp_infectious and sp_primary_school - the Michael Fire entries marked as orphans (served from the mirror) - redundant type forcings removed after the graph-tool coercion fixes
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 695c3d6..72866e8 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -19,13 +19,21 @@
from .. import *
title = "Ugandan village networks (2013)"
-description = """Complete friendship and health advice social networks among households in 17 rural villages bordering Lake Victoria in Mayuge District, Uganda in 2013. Nodes are households and edges represent either a close friendship or a trusted health advisor connection, obtained via a name generator questionnaire.[^icon]
-[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
+description = """Friendship and health advice networks among the households of 17 rural villages bordering Lake Victoria in Mayuge District, Uganda, collected in 2013 by G. F. Chami and collaborators in a census-based survey covering nearly all households (3,491 in total) of the villages. The ties were obtained with a name generator questionnaire, in which respondents named their close friends and the persons they trust for health advice (as reported in the cited paper); the resulting ties are between households. There is one network for each village and type of tie:
+
+- `friendship-1` to `friendship-17`: friendship networks of villages 1 to 17.
+- `health-advice_1` to `health-advice_17`: health advice networks of villages 1 to 17.
+
+Nodes are households and edges are undirected. Some pairs of households are connected by more than one edge, and there are some self-loops.
+
+The networks have the following properties:
+
+- `name`: the anonymized household identifier."""
tags = ['Social', 'Offline', 'Unweighted', 'Multilayer']
url = 'https://www.repository.cam.ac.uk/handle/1810/270256?show=full'
citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'https://doi.org/10.1073/pnas.1700166114')]
icon_hash = '5b2c7544eb70bccf32add88d'
-ustream_license = None
+upstream_license = None
upstream_prefix = 'https://www.repository.cam.ac.uk/bitstream/handle/1810/270256'
files = \
[(f"Uganda%20Network%20Edgelists%202013.zip:Uganda Network Edgelists 2013/friendship/{vil}", f"friendship-{vil}", "csv") for vil in range(1, 18)] + \
Update copyright information 73a4f0d
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index ff30c3e..695c3d6 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2026 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Update copyright information 3d288ea
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 2f3b6c4..ff30c3e 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Update copyright information 8d005ae
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index c538734..2f3b6c4 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Update copyright info db2efcc
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 991097b..c538734 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
-# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
Update citations to use DOIs e878874
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index df17b9d..991097b 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -23,7 +23,7 @@ description = """Complete friendship and health advice social networks among hou
[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
tags = ['Social', 'Offline', 'Unweighted', 'Multilayer']
url = 'https://www.repository.cam.ac.uk/handle/1810/270256?show=full'
-citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'http://www.pnas.org/content/114/36/E7425.abstract')]
+citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'https://doi.org/10.1073/pnas.1700166114')]
icon_hash = '5b2c7544eb70bccf32add88d'
ustream_license = None
upstream_prefix = 'https://www.repository.cam.ac.uk/bitstream/handle/1810/270256'
Change license from GPLv3 to AGPLv3 d754be5
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index ca80451..df17b9d 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -3,18 +3,18 @@
#
# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
+# This program is free software: you can redistribute it and/or modify it under
+# the terms of the GNU Affero General Public License as published by the Free
+# Software Foundation, either version 3 of the License, or (at your option) any
+# later version.
#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
+# details.
#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
+# You should have received a copy of the GNU Affero General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
from .. import *
Add explicit attribution to descriptions obtained from ICON 1645314
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
index 892377e..ca80451 100644
--- a/entries/ugandan_village/__init__.py
+++ b/entries/ugandan_village/__init__.py
@@ -19,7 +19,8 @@
from .. import *
title = "Ugandan village networks (2013)"
-description = "Complete friendship and health advice social networks among households in 17 rural villages bordering Lake Victoria in Mayuge District, Uganda in 2013. Nodes are households and edges represent either a close friendship or a trusted health advisor connection, obtained via a name generator questionnaire."
+description = """Complete friendship and health advice social networks among households in 17 rural villages bordering Lake Victoria in Mayuge District, Uganda in 2013. Nodes are households and edges represent either a close friendship or a trusted health advisor connection, obtained via a name generator questionnaire.[^icon]
+[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
tags = ['Social', 'Offline', 'Unweighted', 'Multilayer']
url = 'https://www.repository.cam.ac.uk/handle/1810/270256?show=full'
citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'http://www.pnas.org/content/114/36/E7425.abstract')]
Initial commit cc85872
diff --git a/entries/ugandan_village/__init__.py b/entries/ugandan_village/__init__.py
new file mode 100644
index 0000000..892377e
--- /dev/null
+++ b/entries/ugandan_village/__init__.py
@@ -0,0 +1,51 @@
+#! /usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+from .. import *
+
+title = "Ugandan village networks (2013)"
+description = "Complete friendship and health advice social networks among households in 17 rural villages bordering Lake Victoria in Mayuge District, Uganda in 2013. Nodes are households and edges represent either a close friendship or a trusted health advisor connection, obtained via a name generator questionnaire."
+tags = ['Social', 'Offline', 'Unweighted', 'Multilayer']
+url = 'https://www.repository.cam.ac.uk/handle/1810/270256?show=full'
+citation = [('G. F. Chami et al., "Social network fragmentation and community health." Proc. Natl. Acad. Sci. USA 114(36), E7425–E7431 (2017)', 'http://www.pnas.org/content/114/36/E7425.abstract')]
+icon_hash = '5b2c7544eb70bccf32add88d'
+ustream_license = None
+upstream_prefix = 'https://www.repository.cam.ac.uk/bitstream/handle/1810/270256'
+files = \
+ [(f"Uganda%20Network%20Edgelists%202013.zip:Uganda Network Edgelists 2013/friendship/{vil}", f"friendship-{vil}", "csv") for vil in range(1, 18)] + \
+ [(f"Uganda%20Network%20Edgelists%202013.zip:Uganda Network Edgelists 2013/health_advice/{vil}", f"health-advice_{vil}", "csv") for vil in range(1, 18)]
+
+def fetch_upstream(force=False):
+ return fetch_upstream_files(__name__.split(".")[-1], upstream_prefix, files,
+ force)
+
+@cache_network()
+@coerce_props()
+@annotate()
+def parse(alts=None):
+ global files
+ name = __name__.split(".")[-1]
+ for fnames, alt, fmt in files:
+ if alts is not None and alt not in alts:
+ continue
+ if isinstance(fnames, str):
+ fnames = [fnames]
+ with ExitStack() as stack:
+ fs = [stack.enter_context(open_upstream_file(name, fn, "rb")) for fn in fnames]
+ g = parse_graph(fs, fmt, directed=False)
+ yield alt, g