History of new_zealand_collab

The changes to the source code of this entry in the repository, newest first, each with the differences it made to the entry's files. They are also listed on GitLab.

2026-11-14 [entries] Remove superfluous details of the upstream distribution from the descriptions by Tiago de Paula Peixoto dc07aa0

The descriptions mentioned incidental details of how the upstream data
are made available: the file formats (CSV, JSON, XML, GEXF, SBML, HIF,
Pajek, UCINET, ...), file names, where the files were published or
obtained from (Zenodo, figshare, Kaggle, the Pajek datasets page, the
Internet Archive), and that some networks are only available in the gt
format. These are left out; caveats about the data themselves are kept,
referring to "the data" instead of "the file". The description of
sp_baboons now lists its properties instead of the upstream columns,
and says that events without a recipient are left out.

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 31e468b..f45b162 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -23,7 +23,7 @@ description = """Network of scientific collaborations among New Zealand institut
 
 Nodes are institutions, and two institutions are connected if they have at least one joint publication, i.e. a publication with authors affiliated with each of them (an author with affiliations to both institutions does not count as a collaboration). The edges are weighted by the number of joint publications.
 
-In the study, institutions were classified into four categories (business enterprise, private not-for-profit, government, and higher education), but this classification is not included in the network file used here.
+In the study, institutions were classified into four categories (business enterprise, private not-for-profit, government, and higher education), but this classification is not included in the data used here.
 
 The network has the following properties:

2026-11-03 [entries] Add the date when each entry was added, and remove icon_hash by Tiago de Paula Peixoto beff7c9

The dates are those of the commits that first added the entries' files
(2020-08-11 for the entries of the initial commit); renamed entries keep
the date of their first name.

Changed: none

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 542882d..31e468b 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -32,7 +32,7 @@ The network has the following properties:
 tags = ['Social', 'Collaboration', 'Weighted']
 url = 'https://doi.org/10.6084/m9.figshare.5705167'
 citation = [('S. Aref, D. Friggens, and S. Hendy, "Analysing scientific collaborations of New Zealand institutions using Scopus bibliometric data." Proc. Australasian Comp. Sci. Week Multiconf. (ACSW ’18), Article 49, 1-10 (2018)', 'https://doi.org/10.1145/3167918.3167920')]
-icon_hash = '5e23dff478691ca4060b62be'
+date_added = '2020-08-11'
 upstream_license = None
 upstream_prefix = 'https://ndownloader.figshare.com/files'
 files = [("10000255:zip:NZ scientific collaboration network/collaboration_network.graphml", None, "graphml")]

2026-11-03 [entries] Prefix the properties in the descriptions with (Node), (Edge) or (Graph) by Tiago de Paula Peixoto bc3dbbd

The lists of properties at the end of the descriptions marked edge
properties with "Edge" but left node properties unmarked, or grouped
them in "Nodes: `a`, ...; `b`, ..." items, so the kind of a property
was often unclear. Every item now starts with (Node), (Edge) or (Graph),
followed by the property names, a colon and the explanation, one item
per property or group of properties; qualifications (kinds of nodes,
networks) follow the names in parentheses. Properties that were only
named got a short explanation, and a few items that named the wrong
kind of property were corrected.

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 6c9f381..542882d 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -27,8 +27,8 @@ In the study, institutions were classified into four categories (business enterp
 
 The network has the following properties:
 
-- `_graphml_vertex_id`: the name of the institution.
-- `weight`: the number of joint publications of the two institutions between 2010 and 2015."""
+- (Node) `_graphml_vertex_id`: the name of the institution.
+- (Edge) `weight`: the number of joint publications of the two institutions between 2010 and 2015."""
 tags = ['Social', 'Collaboration', 'Weighted']
 url = 'https://doi.org/10.6084/m9.figshare.5705167'
 citation = [('S. Aref, D. Friggens, and S. Hendy, "Analysing scientific collaborations of New Zealand institutions using Scopus bibliometric data." Proc. Australasian Comp. Sci. Week Multiconf. (ACSW ’18), Article 49, 1-10 (2018)', 'https://doi.org/10.1145/3167918.3167920')]

2026-11-02 [entries] Remove unneeded code from the entries by Tiago de Paula Peixoto 2c69f19

Unneeded "global files" statements, unused imports and variables,
f-strings without placeholders, duplicate keys in foodweb_little_rock
(keeping the order and the values used), and the second definition of
get_lines() in twitter_higgs. Nothing changes in the networks or
descriptions.

Changed: none

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 4b0abab..6c9f381 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -45,7 +45,6 @@ def fetch_upstream(force=False):
 @coerce_props()
 @annotate()
 def parse(alts=None):
-    global files
     name = __name__.split(".")[-1]
     for fnames, alt, fmt in files:
         if alts is not None and alt not in alts:

2026-10-25 [entries] Fix parse bugs and improve the metadata of existing entries by Tiago de Paula Peixoto c996a0e

From a review of the dataset descriptions against the upstream sources
and papers, and from user reports:

- parse fixes (wrong edge direction or directedness, shifted or
  misnamed properties, merged node identities, duplicated or missing
  edges and nodes, wrong types), e.g. arxiv_citation (the HepTh dates
  were a copy of the HepPh ones; now from the KDD Cup 2003 data),
  eu_procurements, foursquare_global, hiv_transmission, genetic_multiplex,
  gnutella (adds the 05 snapshot), roadnet, macaque_neural, python_dependency
- descriptions rewritten from the upstream sources, documenting every
  property
- corrected titles, citations and DOIs, licences (ustream_license typo,
  the data's own terms), tags and ICON ids
- url lists for entries with several sources or dataset pages
- SocioPatterns entries moved to the site's new data location, with the
  daily networks of sp_infectious and sp_primary_school
- the Michael Fire entries marked as orphans (served from the mirror)
- redundant type forcings removed after the graph-tool coercion fixes

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index acf2d3b..4b0abab 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -19,13 +19,21 @@
 from .. import *
 
 title = "New Zealand scientific collaborations (2015)"
-description = """A network of scientific collaborations among institutions in New Zealand. Nodes are institutions (universities, organizations, etc.), and two nodes i,j are connected if Scopus lists at least one publication with authors at institutions i and j, in the period 2010-2015. Edges are weighted by the number of such collaborations. Nodes are annotated with the categorical type of institution.[^icon]
-[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
-tags = ['Social', 'Collaboration', 'Weighted', 'Metadata']
+description = """Network of scientific collaborations among New Zealand institutions, constructed by S. Aref, D. Friggens and S. Hendy from a full extract of the Scopus bibliographic database, restricted to New Zealand publications from 2010 to 2015. Scopus affiliation IDs were grouped into institutions (universities, Crown Research Institutes, government agencies, district health boards, companies, non-profit organizations, etc.) using a manually compiled mapping of the New Zealand Ministry of Business, Innovation and Employment (MBIE); affiliations that were missing or not identifiable as specific institutions were excluded.
+
+Nodes are institutions, and two institutions are connected if they have at least one joint publication, i.e. a publication with authors affiliated with each of them (an author with affiliations to both institutions does not count as a collaboration). The edges are weighted by the number of joint publications.
+
+In the study, institutions were classified into four categories (business enterprise, private not-for-profit, government, and higher education), but this classification is not included in the network file used here.
+
+The network has the following properties:
+
+- `_graphml_vertex_id`: the name of the institution.
+- `weight`: the number of joint publications of the two institutions between 2010 and 2015."""
+tags = ['Social', 'Collaboration', 'Weighted']
 url = 'https://doi.org/10.6084/m9.figshare.5705167'
 citation = [('S. Aref, D. Friggens, and S. Hendy, "Analysing scientific collaborations of New Zealand institutions using Scopus bibliometric data." Proc. Australasian Comp. Sci. Week Multiconf. (ACSW ’18), Article 49, 1-10 (2018)', 'https://doi.org/10.1145/3167918.3167920')]
 icon_hash = '5e23dff478691ca4060b62be'
-ustream_license = None
+upstream_license = None
 upstream_prefix = 'https://ndownloader.figshare.com/files'
 files = [("10000255:zip:NZ scientific collaboration network/collaboration_network.graphml", None, "graphml")]

2026-10-24 Update copyright information by Tiago de Paula Peixoto 73a4f0d

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 3e5d890..acf2d3b 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2026 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free

2024-05-27 Update copyright information by Tiago de Paula Peixoto 3d288ea

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 8f13163..3e5d890 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2024 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free

2023-02-19 Update copyright information by Tiago de Paula Peixoto 8d005ae

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index b25377c..8f13163 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2020-2023 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free

2021-06-22 Update copyright info by Tiago de Paula Peixoto db2efcc

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 65a95ff..b25377c 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -1,7 +1,7 @@
 #! /usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+# Copyright (C) 2021 Tiago de Paula Peixoto <tiago@skewed.de>
 #
 # This program is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free

2020-09-15 Change license from GPLv3 to AGPLv3 by Tiago de Paula Peixoto d754be5

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index f2d972c..65a95ff 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -3,18 +3,18 @@
 #
 # Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
+# This program is free software: you can redistribute it and/or modify it under
+# the terms of the GNU Affero General Public License as published by the Free
+# Software Foundation, either version 3 of the License, or (at your option) any
+# later version.
 #
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU Affero General Public License for more
+# details.
 #
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+# You should have received a copy of the GNU Affero General Public License along
+# with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 from .. import *

2020-09-13 Add explicit attribution to descriptions obtained from ICON by Tiago de Paula Peixoto 1645314

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
index 7ee41ee..f2d972c 100644
--- a/entries/new_zealand_collab/__init__.py
+++ b/entries/new_zealand_collab/__init__.py
@@ -19,7 +19,8 @@
 from .. import *
 
 title = "New Zealand scientific collaborations (2015)"
-description = "A network of scientific collaborations among institutions in New Zealand. Nodes are institutions (universities, organizations, etc.), and two nodes i,j are connected if Scopus lists at least one publication with authors at institutions i and j, in the period 2010-2015. Edges are weighted by the number of such collaborations. Nodes are annotated with the categorical type of institution."
+description = """A network of scientific collaborations among institutions in New Zealand. Nodes are institutions (universities, organizations, etc.), and two nodes i,j are connected if Scopus lists at least one publication with authors at institutions i and j, in the period 2010-2015. Edges are weighted by the number of such collaborations. Nodes are annotated with the categorical type of institution.[^icon]
+[^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project."""
 tags = ['Social', 'Collaboration', 'Weighted', 'Metadata']
 url = 'https://doi.org/10.6084/m9.figshare.5705167'
 citation = [('S. Aref, D. Friggens, and S. Hendy, "Analysing scientific collaborations of New Zealand institutions using Scopus bibliometric data." Proc. Australasian Comp. Sci. Week Multiconf. (ACSW ’18), Article 49, 1-10 (2018)', 'https://doi.org/10.1145/3167918.3167920')]

2020-08-11 Initial commit by Tiago de Paula Peixoto cc85872

diff --git a/entries/new_zealand_collab/__init__.py b/entries/new_zealand_collab/__init__.py
new file mode 100644
index 0000000..7ee41ee
--- /dev/null
+++ b/entries/new_zealand_collab/__init__.py
@@ -0,0 +1,49 @@
+#! /usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# Copyright (C) 2020 Tiago de Paula Peixoto <tiago@skewed.de>
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+from .. import *
+
+title = "New Zealand scientific collaborations (2015)"
+description = "A network of scientific collaborations among institutions in New Zealand. Nodes are institutions (universities, organizations, etc.), and two nodes i,j are connected if Scopus lists at least one publication with authors at institutions i and j, in the period 2010-2015. Edges are weighted by the number of such collaborations. Nodes are annotated with the categorical type of institution."
+tags = ['Social', 'Collaboration', 'Weighted', 'Metadata']
+url = 'https://doi.org/10.6084/m9.figshare.5705167'
+citation = [('S. Aref, D. Friggens, and S. Hendy, "Analysing scientific collaborations of New Zealand institutions using Scopus bibliometric data." Proc. Australasian Comp. Sci. Week Multiconf. (ACSW ’18), Article 49, 1-10 (2018)', 'https://doi.org/10.1145/3167918.3167920')]
+icon_hash = '5e23dff478691ca4060b62be'
+ustream_license = None
+upstream_prefix = 'https://ndownloader.figshare.com/files'
+files = [("10000255:zip:NZ scientific collaboration network/collaboration_network.graphml", None, "graphml")]
+
+def fetch_upstream(force=False):
+    return fetch_upstream_files(__name__.split(".")[-1], upstream_prefix, files,
+                                force)
+
+@cache_network()
+@coerce_props()
+@annotate()
+def parse(alts=None):
+    global files
+    name = __name__.split(".")[-1]
+    for fnames, alt, fmt in files:
+        if alts is not None and alt not in alts:
+            continue
+        if isinstance(fnames, str):
+            fnames = [fnames]
+        with ExitStack() as stack:
+            fs = [stack.enter_context(open_upstream_file(name, fn, "rb")) for fn in fnames]
+            g = parse_graph(fs, fmt, directed=False)
+        yield alt, g