Netzschleuder
network catalogue, repository and centrifuge
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The network in this dataset can be loaded directly from graph-tool with:import graph_tool.all as gt g = gt.collection.ns["collins_yeast"]
collins_yeast — Collins yeast interactome (2007)
- Description
Network of protein-protein interactions in Saccharomyces cerevisiae (budding yeast), measured by co-complex associations identified by high-throughput affinity purification and mass spectrometry (AP/MS)1
- Tags
- Biological Protein interactions Unweighted
- Citation
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- S.R. Collins et al., "Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae." Mol. Cell. Proteomics 6(3), 439-450 (2007), https://doi.org/10.1074/mcp.m600381-mcp200 [@sci-hub]
- Upstream URL OK
- http://interactome.dfci.harvard.edu/S_cerevisiae/index.php?page=download
- Networks
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Tip: hover your mouse over a table header to obtain a legend.
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv collins_yeast 1,622 9,070 11.18 16.23 58.74 630.48 0.61 0.62 15 0.62 Undirected Unipartite 35 KiB 59 KiB 60 KiB 47 KiB - Ridiculograms
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