Netzschleuder
network catalogue, repository and centrifuge
Showing only entries with tags:
Biological
Tip: click on the table header to sort the list. Hover your mouse over it to obtain a legend.
Tip: click on the table header to sort the list. Hover your mouse over it to obtain a legend.
| Name | Title | Nodes | Edges | $\left<k\right>$ | $\sigma_k$ | $\lambda_h$ | $\tau$ | $r$ | $c$ | $\oslash$ | $S$ | Kind | Mode | $n$ | Tags |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| blumenau_drug | Blumenau drug interactions (2019) | 75 | 181 | 4.83 | 4.30 | 6.57 | 4.59 | -0.31 | 0.11 | 6 | 1.00 | Undirected | Unipartite | 1 | Biological Drug interactions Weighted Metadata |
| budapest_connectome | Budapest Reference Connectome 3.0 | 1,015 | 71,604 | 141.09 | 71.68 | 179.75 | 50.94 | 0.03 | 0.56 | 5 | 1.00 | Undirected | Unipartite | 9 | Biological Connectome Weighted |
| celegans_2019 | Complete C. elegans neurons (2019) | 586 | 1,758 | 6.00 | 6.71 | 16.46 | 107.44 | 0.24 | 0.22 | 17 | 0.83 | Undirected | Unipartite | 12 | Biological Connectome Weighted |
| celegans_interactomes | C. elegans interactomes (2009) | 6,176 | 178,151 | 57.69 | 123.63 | 361.03 | 114.24 | 0.16 | 0.47 | 12 | 0.97 | Undirected | Unipartite | 10 | Biological Protein interactions Unweighted |
| celegans_metabolic | Metabolic network (C. elegans) | 453 | 4,596 | 20.29 | 52.23 | 23.97 | 21.93 | -0.06 | 0.35 | 7 | 1.00 | Undirected | Unipartite | 1 | Biological Metabolic Unweighted |
| celegansneural | C. elegans neurons (1986) | 297 | 2,359 | 7.94 | 14.12 | 22.76 | 4.78 | -0.15 | 0.20 | 5 | 1.00 | Directed | Unipartite | 1 | Biological Connectome Weighted |
| cintestinalis | Tadpole larva brain (C. intestinalis) | 205 | 2,903 | 14.16 | 18.74 | 36.23 | 3.85 | 0.20 | 0.36 | 6 | 1.00 | Directed | Unipartite | 1 | Biological Connectome Weighted |
| collins_yeast | Collins yeast interactome (2007) | 1,622 | 9,070 | 11.18 | 16.23 | 58.74 | 630.48 | 0.61 | 0.62 | 15 | 0.62 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| drosophila_flybi | Fruit fly protein interactions (Drosophila melanogaster) | 2,939 | 8,723 | 5.94 | 10.72 | 25.26 | 52.25 | -0.12 | 0.04 | 10 | 0.92 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| ecoli_transcription | E. coli transcription network (2002) | 424 | 577 | 1.36 | 4.88 | 6.12 | 141.95 | -0.19 | 0.02 | 13 | 0.78 | Directed | Unipartite | 2 | Biological Gene regulation Unweighted |
| fly_hemibrain | Fly hemibrain (2020) | 21,739 | 4,259,624 | 195.94 | 419.23 | 493.08 | 18.04 | 0.00 | 0.25 | 5 | 1.00 | Directed | Unipartite | 1 | Biological Connectome Weighted Metadata |
| fly_larva | Drosophila larva brain (2023) | 2,956 | 116,922 | 39.55 | 56.78 | 109.29 | 17.48 | 0.33 | 0.30 | 9 | 1.00 | Directed | Unipartite | 1 | Biological Connectome Weighted Metadata |
| foodweb_baywet | Florida cypress wetlands food web (1998) | 128 | 2,106 | 16.45 | 16.30 | 38.44 | 1.72 | -0.12 | 0.31 | 3 | 1.00 | Directed | Unipartite | 1 | Biological Food web Weighted |
| foodweb_little_rock | Little Rock Lake food web (1991) | 183 | 2,494 | 13.63 | 21.73 | 40.62 | 4.39 | -0.24 | 0.35 | 4 | 1.00 | Directed | Unipartite | 1 | Biological Food web Unweighted |
| fresh_webs | Freshwater stream webs | 113 | 832 | 7.36 | 11.25 | 21.54 | 1.77 | -0.21 | 0.02 | 4 | 0.99 | Directed | Unipartite | 26 | Biological Food web Unweighted Metadata |
| fullerene_structures | Fullerene molecular structures | 6,000 | 9,000 | 3.00 | 0.00 | 2.00 | 1241.32 | nan | 0.00 | 99 | 1.00 | Undirected | Unipartite | 15 | Biological Chemical Unweighted Spatial |
| genetic_multiplex | Multiplex genetic interactions (2014) | 18,222 | 170,899 | 9.38 | 100.44 | 122.68 | 14.20 | -0.06 | 0.03 | 9 | 1.00 | Directed | Unipartite | 19 | Biological Gene regulation Protein interactions Unweighted Multilayer |
| human_brains | Human brain networks | 1,827,242 | 143,158,339 | 156.69 | 422.30 | 2712.71 | 120881.94 | 0.44 | 0.32 | 108 | 0.36 | Undirected | Unipartite | 66255 | Biological Connectome |
| interactome_figeys | Figeys human interactome (2007) | 2,239 | 6,452 | 2.88 | 17.01 | 27.83 | 16.04 | -0.33 | 0.01 | 10 | 0.99 | Directed | Unipartite | 1 | Biological Protein interactions Unweighted |
| interactome_pdz | PDZ-domain interactome (2005) | 212 | 244 | 2.30 | 2.64 | 4.03 | 50.97 | -0.36 | 0.00 | 10 | 0.76 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| interactome_stelzl | Stelzl human interactome (2005) | 1,706 | 6,207 | 3.64 | 13.79 | 15.47 | 77.05 | -0.18 | 0.01 | 13 | 0.95 | Directed | Unipartite | 1 | Biological Protein interactions Unweighted |
| interactome_vidal | Vidal human interactome (2005) | 3,133 | 6,726 | 4.29 | 6.88 | 13.91 | 39.11 | -0.10 | 0.04 | 13 | 0.89 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| interactome_yeast | Coulomb yeast interactome (2005) | 1,870 | 2,277 | 2.44 | 3.16 | 5.84 | 133.86 | -0.15 | 0.06 | 19 | 0.78 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| kegg_metabolic | Metabolic networks from KEGG (2006) | 1,917 | 6,084 | 6.35 | 21.97 | 28.76 | 7.54 | -0.20 | 0.04 | 8 | 0.97 | Undirected | Unipartite | 109 | Biological Metabolic Unweighted |
| macaque_neural | Macaque cortical connectivity (Young) | 47 | 505 | 21.49 | 11.05 | 15.69 | 3.35 | 0.01 | 0.56 | 4 | 1.00 | Undirected | Unipartite | 1 | Biological Connectome Unweighted |
| malaria_genes | Malaria var DBLa HVR networks | 307 | 2,812 | 18.32 | 11.05 | 35.20 | 76.31 | 0.60 | 0.59 | 8 | 1.00 | Undirected | Unipartite | 10 | Biological Genetic Unweighted Projection Metadata Multilayer |
| messal_shale | Messel Shale food web (2014) | 700 | 6,444 | 9.21 | 18.74 | 32.84 | 4.74 | -0.16 | 0.08 | 6 | 1.00 | Directed | Unipartite | 1 | Biological Food Web Uncertain Weighted Metadata |
| mist | MIST protein interaction database (2020) | 109,706 | 2,864,523 | 52.22 | 102.93 | 252.64 | 5.34 | -0.10 | 0.07 | 7 | 0.15 | Undirected | Unipartite | 34 | Biological Protein interactions Unweighted |
| nematode_mammal | Global nematode–mammal interactions (2018) | 30,516 | 146,683 | 9.61 | 33.31 | 33.83 | 511.13 | 0.03 | 0.00 | 24 | 0.86 | Undirected | Bipartite | 1 | Biological Food web Unweighted Metadata |
| plant_pol_kato | Kato plant-pollinator web | 772 | 1,206 | 3.12 | 9.25 | 9.60 | 10.02 | -0.30 | 0.00 | 8 | 0.99 | Undirected | Bipartite | 1 | Biological Food web Weighted |
| plant_pol_robertson | Robertson plant-pollinator web | 1,884 | 15,265 | 16.20 | 29.64 | 54.02 | 31.30 | -0.32 | 0.00 | 8 | 1.00 | Undirected | Bipartite | 1 | Biological Food web Unweighted |
| plant_pol_vazquez | Vazquez & Simberloff plant-pollinator webs | 144 | 42 | 0.58 | 1.87 | 2.03 | 11.96 | -0.43 | 0.00 | 7 | 0.22 | Undirected | Bipartite | 9 | Biological Food web Weighted Multilayer |
| psi | Plant Photosystem I excitation energy transfer network (2020) | 192 | 29,390 | 153.07 | 73.83 | 184.29 | 0.27 | -0.09 | 0.99 | 2 | 1.00 | Directed | Unipartite | 1 | Biological Weighted |
| reactome | Joshi-Tope human protein interactome (2005) | 6,327 | 147,547 | 46.64 | 66.81 | 207.04 | 170.67 | 0.25 | 0.61 | 24 | 0.94 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| tree-of-life | Protein interactomes across the tree of life (2019) | 16,439 | 440,135 | 53.55 | 86.94 | 258.15 | 40.94 | 0.06 | 0.36 | 9 | 1.00 | Undirected | Unipartite | 1840 | Biological Protein interactions |
| yeast_transcription | Yeast transcription network (2002) | 916 | 1,094 | 1.19 | 5.15 | 6.84 | 93.12 | -0.38 | 0.02 | 15 | 0.72 | Directed | Unipartite | 1 | Biological Gene regulation Unweighted |