drosophila_flybi — Fruit fly protein interactions (Drosophila melanogaster)
- Description
Binary protein-protein interactions (PPIs) for Drosophila melanogaster, containing 8723 PPIs among 2939 proteins. The interactions were identified using a yeast two-hybrid (Y2H) analysis. Nodes are proteins, and an undirected edge connects two proteins that were found to interact.
- Tags
- Biological Protein interactions Unweighted
- Added
- 2023-04-16
- Citation
-
- Tang, HW., Spirohn, K., Hu, Y. et al. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Nat Commun 14, 2162 (2023) 10.1038/s41467-023-37876-0 Sci-Hub
- Upstream URL OK
- https://doi.org/10.1038/s41467-023-37876-0
- Upstream license
- CC BY 4.0, https://creativecommons.org/licenses/by/4.0/
- Networks
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Tip: hover over a column header for a description.
Column legend
- $\left<k\right>$
- Mean degree
- $\sigma_k$
- Standard deviation of the degrees
- $\lambda_h$
- Largest eigenvalue of the Hashimoto (non-backtracking) matrix
- $\tau$
- Random walk mixing time
- $r$
- Degree assortativity
- $c$
- Global clustering coefficient
- $\oslash$
- (Pseudo-) diameter
- $S$
- Relative size of the largest component
- NPs
- Node properties
- EPs
- Edge properties
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv drosophila_ flybi 2,939 8,723 5.94 10.72 25.26 52.25 -0.12 0.04 10 0.92 Undirected Unipartite code name direction screens assays database reference exp_direct exp_indirect comment 96 KiB 148 KiB 133 KiB 117 KiB - Ridiculograms*
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