genetic_multiplex — Multiplex genetic interactions (2014)

Description

Multiplex networks representing different types of genetic interactions, for different organisms. Layers represent (i) physical, (ii) association, (iii) co-localization, (iv) direct, and (v) suppressive, (vi) additive or synthetic genetic interaction. Edge direction (i,j) indicates gene i interacting with gene j.¹

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1. Description obtained from the ICON project. ↩

Tags

Biological Gene regulation Protein interactions Unweighted Multilayer

Citation

• M. De Domenico, M. A. Porter, & A. Arenas. "MuxViz: a tool for multilayer analysis and visualization of networks". Journal of Complex Networks, cnu038. (2014)., https://doi.org/10.1093/comnet/cnu038 [@sci-hub]

Upstream URL OK

https://manliodedomenico.com/data.php

Networks

Tip: click on the table header to sort the list. Hover your mouse over it to obtain a legend.

Name	Nodes	Edges	$\left<k\right>$	$\sigma_k$	$\lambda_h$	$\tau$	$r$	$c$	$\oslash$	$S$	Kind	Mode	NPs	EPs	gt	GraphML	GML	csv
Arabidopsis	6,980	18,655	2.67	18.85	21.49	83.73	-0.08	0.03	14	0.96	Directed	Unipartite	name nodeLabel	weight layer	166 KiB	258 KiB	250 KiB	199 KiB
Bos_Multiplex_Genetic	325	322	0.99	2.28	2.56	73.00	-0.24	0.03	12	0.20	Directed	Unipartite	name nodeLabel	weight layer	8 KiB	11 KiB	10 KiB	8 KiB
Candida	367	398	1.08	11.88	3.28	66.85	-0.45	0.00	7	0.83	Directed	Unipartite	name nodeLabel	weight layer	9 KiB	12 KiB	11 KiB	9 KiB
Celegans	3,879	8,182	2.11	13.26	25.60	31.64	-0.14	0.03	13	0.95	Directed	Unipartite	name nodeLabel	weight layer	91 KiB	136 KiB	130 KiB	107 KiB
Drosophila	8,215	43,367	5.28	17.27	46.06	26.69	0.06	0.15	10	0.99	Directed	Unipartite	name nodeLabel	weight layer	239 KiB	415 KiB	388 KiB	311 KiB
DanioRerio	155	188	1.21	2.50	3.63	28.73	0.09	0.16	6	0.20	Directed	Unipartite	name nodeLabel	weight layer	4 KiB	6 KiB	5 KiB	4 KiB
Gallus	313	389	1.24	9.58	5.23	21.46	-0.44	0.01	8	0.65	Directed	Unipartite	name nodeLabel	weight layer	8 KiB	11 KiB	10 KiB	8 KiB
HepatitusCVirus	105	137	1.30	13.10	1.00	0.05	-0.99	0.00	2	0.98	Directed	Bipartite	name nodeLabel	weight layer	3 KiB	4 KiB	4 KiB	3 KiB
Homo	18,222	170,899	9.38	100.44	122.68	14.20	-0.06	0.03	9	1.00	Directed	Unipartite	name nodeLabel	weight layer	607 KiB	1.2 MiB	1.1 MiB	892 KiB
HumanHerpes4	216	259	1.20	11.05	1.60	228.28	-0.52	0.00	7	0.88	Directed	Unipartite	name nodeLabel	weight layer	5 KiB	8 KiB	7 KiB	5 KiB
HumanHIV1	1,005	1,355	1.35	16.35	8.60	26.39	-0.65	0.00	5	1.00	Directed	Unipartite	name nodeLabel	weight layer	23 KiB	34 KiB	32 KiB	25 KiB
Mus	7,747	19,843	2.56	14.41	31.94	59.36	-0.18	0.03	16	0.96	Directed	Unipartite	name nodeLabel	weight layer	183 KiB	296 KiB	282 KiB	230 KiB
Oryctolagus	144	144	1.00	6.52	1.81	0.03	-0.44	0.01	2	0.55	Directed	Unipartite	name nodeLabel	weight layer	4 KiB	6 KiB	5 KiB	4 KiB
Plasmodium	1,203	2,522	2.10	6.05	11.37	12.72	0.01	0.03	10	0.96	Directed	Unipartite	name nodeLabel	weight layer	29 KiB	40 KiB	38 KiB	31 KiB
Rattus	2,640	4,268	1.62	18.11	13.66	85.57	-0.16	0.01	13	0.89	Directed	Unipartite	name nodeLabel	weight layer	63 KiB	92 KiB	87 KiB	70 KiB
Sacchcere	6,570	282,755	43.04	141.24	207.99	4.94	-0.08	0.15	6	1.00	Directed	Unipartite	name nodeLabel	weight layer	520 KiB	1.2 MiB	1.1 MiB	951 KiB
Sacchpomb	4,092	63,677	15.56	64.69	108.20	17.30	-0.23	0.11	8	1.00	Directed	Unipartite	name nodeLabel	weight layer	169 KiB	355 KiB	329 KiB	262 KiB
Xenopus	461	620	1.34	3.43	4.30	115.21	-0.14	0.12	14	0.57	Directed	Unipartite	name nodeLabel	weight layer	11 KiB	17 KiB	15 KiB	12 KiB
YeastLandscape	4,458	8,473,997	1900.85	818.52	3913.37	1.12	-0.01	0.93	2	1.00	Directed	Unipartite	name nodeLabel	weight layer	14.5 MiB	52.4 MiB	35.3 MiB	33.6 MiB

Ridiculograms