Netzschleuder
network catalogue, repository and centrifuge
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You may also take a look at the source code.
The network in this dataset can be loaded directly from graph-tool with:import graph_tool.all as gt g = gt.collection.ns["interactome_figeys"]
interactome_figeys — Figeys human interactome (2007)
- Description
A network of human proteins and their binding interactions. Nodes represent proteins and an edge represents an interaction between two proteins, as inferred using a mass spectrometry‐based approach.1
- Tags
- Biological Protein interactions Unweighted
- Citation
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- R. Ewing, et al. "Large‐scale mapping of human protein–protein interactions by mass spectrometry." Molecular systems biology 3.1 (2007)., https://doi.org/10.1038/msb4100134 [@sci-hub]
- Upstream URL OK
- http://konect.cc/networks/maayan-figeys
- Networks
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Tip: hover your mouse over a table header to obtain a legend.
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv interactome_figeys 2,239 6,452 2.88 17.01 27.83 16.04 -0.33 0.01 10 0.99 Directed Unipartite 47 KiB 65 KiB 61 KiB 49 KiB - Ridiculograms
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