Netzschleuder
network catalogue, repository and centrifuge
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You may also take a look at the source code.
The network in this dataset can be loaded directly from graph-tool with:import graph_tool.all as gt g = gt.collection.ns["interactome_pdz"]
interactome_pdz — PDZ-domain interactome (2005)
- Description
A network of PDZ-domain-mediated protein–protein binding interactions, extracted from the PDZBase database. Nodes represent proteins and an edge represents a binding interaction between two proteins.1
- Tags
- Biological Protein interactions Unweighted
- Citation
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- T. Beuming et al. "PDZBase: a protein–protein interaction database for PDZ-domains." Bioinformatics 21.6, 827-828. (2005)., https://doi.org/10.1093/bioinformatics/bti098 [@sci-hub]
- Upstream URL OK
- http://konect.cc/networks/maayan-pdzbase
- Networks
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Tip: hover your mouse over a table header to obtain a legend.
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv interactome_pdz 212 244 2.30 2.64 4.03 50.97 -0.36 0.00 10 0.76 Undirected Unipartite 5 KiB 7 KiB 6 KiB 5 KiB - Ridiculograms
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