Netzschleuder
network catalogue, repository and centrifuge
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You may also take a look at the source code.
The network in this dataset can be loaded directly from graph-tool with:import graph_tool.all as gt g = gt.collection.ns["interactome_yeast"]
interactome_yeast — Coulomb yeast interactome (2005)
- Description
A network of protein-protein binding interactions among yeast proteins. Nodes represent proteins found in yeast (Saccharomyces cerevisiae) and an edge represents a binding interaction between two proteins.1
- Tags
- Biological Protein interactions Unweighted
- Citation
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- S. Coulomb et al. "Gene essentiality and the topology of protein interaction networks." Proc. Roy. Soc. London B: Biological Sciences 272(1573), 1721-1725 (2005)., https://doi.org/10.1098/rspb.2005.3128 [@sci-hub]
- Upstream URL OK
- http://konect.cc/networks/moreno_propro
- Networks
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Tip: hover your mouse over a table header to obtain a legend.
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv interactome_yeast 1,870 2,277 2.44 3.16 5.84 133.86 -0.15 0.06 19 0.78 Undirected Unipartite 36 KiB 48 KiB 46 KiB 38 KiB - Ridiculograms
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