# Netzschleuder network catalogue, repository and centrifuge

Problems with this dataset? Open an issue.
You may also take a look at the source code.
The networks in this dataset can be loaded directly from graph-tool with:
import graph_tool.all as gt
g = gt.collection.ns["malaria_genes/HVR_1"]

(and likewise for the other networks available.)

# malaria_genes — Malaria var DBLa HVR networks

Description

Networks of recombinant antigen genes from the human malaria parasite P. falciparum. Each of the 9 networks shares the same set of vertices but has different edges, corresponding to the 9 highly variable regions (HVRs) in the DBLa domain of the var protein. Nodes are var genes, and two genes are connected if they share a substring whose length is statistically significant. Metadata includes two types of node labels, both based on sequence structure around HVR6.1

1. Description obtained from the ICON project.

Tags
Biological Genetic Unweighted Projection Metadata Multilayer
Citation
Upstream URL OK
https://github.com/dblarremore/data_malaria_PLOSCompBiology_2013
Networks
Tip: click on the table header to sort the list. Hover your mouse over it to obtain a legend.
Name Nodes Edges $\left<k\right>$ $\sigma_k$ $\lambda_h$ $\tau$ $r$ $c$ $\oslash$ $S$ Kind Mode NPs EPs gt GraphML GML csv
HVR_1 307 2,812 18.32 11.05 35.20 76.31 0.60 0.59 8 1.00 Undirected Unipartite name CysPoLV UPS 8 KiB 15 KiB 14 KiB 12 KiB
HVR_2 307 1,446 9.42 7.43 22.87 73.31 0.73 0.78 9 0.36 Undirected Unipartite name CysPoLV UPS 7 KiB 12 KiB 11 KiB 9 KiB
HVR_3 307 659 4.29 4.29 15.79 10.48 0.98 0.97 5 0.06 Undirected Unipartite name CysPoLV UPS 7 KiB 10 KiB 9 KiB 8 KiB
HVR_4 307 1,214 7.91 6.69 17.51 91.92 0.69 0.73 10 0.60 Undirected Unipartite name CysPoLV UPS 7 KiB 12 KiB 10 KiB 9 KiB
HVR_5 307 2,684 17.49 11.20 25.86 46.45 0.33 0.36 11 0.97 Undirected Unipartite name CysPoLV UPS 9 KiB 16 KiB 14 KiB 12 KiB
HVR_6 307 3,263 21.26 15.78 39.10 62.46 0.64 0.54 10 0.95 Undirected Unipartite name CysPoLV UPS 9 KiB 17 KiB 15 KiB 13 KiB
HVR_7 307 11,688 76.14 36.86 98.57 11.89 0.35 0.64 5 1.00 Undirected Unipartite name CysPoLV UPS 9 KiB 39 KiB 35 KiB 32 KiB
HVR_8 307 3,961 25.80 23.37 53.69 50.43 0.66 0.67 11 0.89 Undirected Unipartite name CysPoLV UPS 8 KiB 18 KiB 16 KiB 15 KiB
HVR_9 307 7,579 49.37 32.06 79.04 5.38 0.48 0.61 5 0.97 Undirected Unipartite name CysPoLV UPS 9 KiB 28 KiB 26 KiB 23 KiB
combined 307 35,306 230.01 92.95 159.41 2.34 0.35 0.71 3 1.00 Undirected Unipartite name CysPoLV UPS HRV 25 KiB 104 KiB 103 KiB 90 KiB
Ridiculograms