mist — MIST protein interaction database (2020)

Description

The Molecular Interaction Search Tool (MIST) is a comprehensive resource of molecular interactions, assembled from severla primary sources. MIST currently supports several species, including:

1. Homo sapiens (Human)
2. Drosophila melanogaster (Fly)
3. Mus musculus (Mouse)
4. Caenorhabditis elegans (Worm)
5. Rattus norvegicus (Rat)
6. Saccharomyces cerevisiae (Baker's yeast)
7. Schizosaccharomyces pombe (Fission yeast)
8. Danio rerio (Zebrafish)
9. Xenopus laevis (African clawed frog)
10. Xenopus tropicalis (Western clawed frog)

The database contains four kinds of interactions:

1. Protein-protein interaction (PPI): “PPI” refers to physical interactions between two or more proteins.
2. Interologs (PPI): Interactions predicted based on PPI data obtained for orthologous proteins.
3. Genetic Interactions: Indicate that the effects of mutations in one gene can be modified by mutation of another gene.
4. Genetic Interologs: Interactions predicted based on genetic interaction data obtained for orthologous proteins

Tags

Biological Protein interactions Unweighted

Citation

• Yanhui Hu, Arunachalam Vinayagam, Ankita Nand, Aram Comjean, Verena Chung, Tong Hao, Stephanie E Mohr, and Norbert Perrimon, “Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data.” Nucleic Acids Res, 46, D1, Pp. D567-D574 (2017), http://dx.doi.org/10.1093/nar/gkx1116

Upstream URL 503

https://fgrtools.hms.harvard.edu/MIST/index.jsp

Networks

Tip: click on the table header to sort the list. Hover your mouse over it to obtain a legend.

Name	Nodes	Edges	$\left<k\right>$	$\sigma_k$	$\lambda_h$	$\tau$	$r$	$c$	$\oslash$	$S$	Kind	Mode	NPs	EPs	gt	GraphML	GML	csv
ppi_fission_yeast	3,705	15,167	8.19	26.07	40.57	21.00	-0.24	0.03	9	0.97	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	150 KiB	232 KiB	225 KiB	212 KiB
ppi_yeast	7,272	165,705	45.57	129.89	202.31	4.13	-0.18	0.06	6	1.00	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	1.1 MiB	1.8 MiB	1.7 MiB	1.7 MiB
ppi_worm	8,874	42,541	9.59	28.54	82.41	107.49	-0.11	0.11	13	0.97	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	388 KiB	569 KiB	556 KiB	525 KiB
ppi_fly	11,352	135,037	23.79	45.80	104.49	90.14	-0.15	0.08	10	1.00	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	967 KiB	1.5 MiB	1.4 MiB	1.4 MiB
ppi_zebrafish	452	458	2.03	5.39	4.79	46.61	-0.26	0.02	9	0.44	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	13 KiB	17 KiB	16 KiB	15 KiB
ppi_western_clawed_frog	50	41	1.64	3.06	1.00	0.03	-0.49	0.00	2	0.46	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2 KiB	3 KiB	2 KiB	2 KiB
ppi_human	27,594	526,471	38.16	91.50	238.56	8.26	-0.08	0.06	8	1.00	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	4.3 MiB	6.6 MiB	6.3 MiB	6.4 MiB
ppi_mouse	18,838	75,110	7.97	44.25	72.44	27.72	-0.10	0.01	11	0.99	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	795 KiB	1.2 MiB	1.1 MiB	1.1 MiB
ppi_rat	7,050	14,969	4.25	19.09	30.03	39.03	-0.20	0.01	12	0.96	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	229 KiB	320 KiB	308 KiB	283 KiB
ppi_interolog_fission_yeast	21,912	266,887	24.36	82.13	282.81	1.58	-0.09	0.16	5	0.18	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	3.0 MiB	4.6 MiB	4.2 MiB	4.6 MiB
ppi_interolog_yeast	35,355	958,936	54.25	125.44	210.83	2.69	-0.20	0.08	5	0.14	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	8.0 MiB	14.2 MiB	12.7 MiB	13.9 MiB
ppi_interolog_worm	46,404	643,319	27.73	82.42	322.00	3.93	-0.02	0.12	5	0.16	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	6.5 MiB	10.0 MiB	9.1 MiB	10.0 MiB
ppi_interolog_fly	58,896	1,180,954	40.10	85.40	352.42	3.90	0.05	0.12	6	0.13	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	10.1 MiB	17.5 MiB	15.4 MiB	16.7 MiB
ppi_interolog_zebrafish	17,845	789,779	88.52	170.12	374.45	2.95	-0.09	0.10	6	0.94	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	8.0 MiB	12.3 MiB	11.3 MiB	12.4 MiB
ppi_interolog_western_clawed_frog	13,271	550,375	82.94	147.96	314.26	2.90	-0.09	0.10	7	1.00	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	5.8 MiB	8.9 MiB	8.1 MiB	8.8 MiB
ppi_interolog_human	109,706	2,864,523	52.22	102.93	252.64	5.34	-0.10	0.07	7	0.15	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	26.6 MiB	42.8 MiB	38.9 MiB	42.7 MiB
ppi_interolog_mouse	71,318	933,081	26.17	92.61	342.00	5.18	-0.11	0.08	6	0.24	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	10.1 MiB	15.1 MiB	13.9 MiB	14.9 MiB
ppi_interolog_rat	35,093	747,063	42.58	114.96	334.60	3.68	-0.07	0.09	7	0.49	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	7.9 MiB	12.2 MiB	11.1 MiB	12.1 MiB
genetic_fission_yeast	3,563	52,013	29.20	55.04	108.62	9.23	-0.28	0.09	9	0.99	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	244 KiB	521 KiB	507 KiB	468 KiB
genetic_yeast	5,936	442,019	148.93	172.55	336.99	11.72	-0.08	0.14	8	1.00	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	1.7 MiB	3.8 MiB	3.7 MiB	3.5 MiB
genetic_worm	3,178	8,011	5.04	17.50	29.90	42.99	-0.20	0.03	13	0.96	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	83 KiB	129 KiB	128 KiB	115 KiB
genetic_fly	4,209	13,882	6.60	15.32	36.04	19.19	-0.10	0.08	12	0.96	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	188 KiB	274 KiB	265 KiB	255 KiB
genetic_zebrafish	66	65	1.97	1.73	2.05	9.15	-0.20	0.15	5	0.32	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	3 KiB	4 KiB	3 KiB	3 KiB
genetic_human	3,751	9,034	4.82	19.83	35.45	141.13	-0.16	0.04	11	0.95	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	100 KiB	157 KiB	147 KiB	134 KiB
genetic_mouse	368	357	1.94	3.06	2.83	270.87	-0.18	0.05	17	0.58	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	11 KiB	14 KiB	14 KiB	12 KiB
genetic_rat	39	24	1.23	0.58	1.00	0.02	-0.33	0.00	2	0.10	Undirected	Bipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2 KiB	3 KiB	2 KiB	2 KiB
genetic_interolog_yeast	33,399	2,028,834	121.49	139.71	300.98	4.95	-0.07	0.17	7	0.14	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	11.3 MiB	26.2 MiB	21.6 MiB	22.9 MiB
genetic_interolog_worm	23,826	285,752	23.99	66.26	257.37	248.65	0.17	0.16	8	0.21	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2.0 MiB	3.9 MiB	3.4 MiB	3.5 MiB
genetic_interolog_fly	27,105	334,495	24.68	69.32	286.14	10.98	0.23	0.18	8	0.19	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2.7 MiB	5.0 MiB	4.3 MiB	4.6 MiB
genetic_interolog_zebrafish	8,699	317,814	73.07	131.92	317.11	17.76	-0.00	0.17	8	0.96	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2.1 MiB	4.4 MiB	3.6 MiB	3.8 MiB
genetic_interolog_western_clawed_frog	6,618	185,239	55.98	97.44	229.63	11.09	-0.02	0.16	8	1.00	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	1.3 MiB	2.6 MiB	2.2 MiB	2.3 MiB
genetic_interolog_human	27,707	363,570	26.24	80.04	310.02	25.36	0.11	0.17	10	0.24	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2.6 MiB	5.2 MiB	4.4 MiB	4.6 MiB
genetic_interolog_mouse	9,815	318,298	64.86	127.09	315.70	11.00	-0.03	0.17	8	0.82	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	2.3 MiB	4.3 MiB	3.6 MiB	3.9 MiB
genetic_interolog_rat	7,946	250,780	63.12	114.43	272.56	18.54	-0.03	0.16	10	0.98	Undirected	Unipartite	gene tax_id	MasterNetID Rank Interaction_type Exp_Direct Exp_Indirect TaxID_interolog Source_databases Reference Reference_type Count_direct Count_indirect Count_paper Source_Interolog Comment	1.7 MiB	3.5 MiB	2.9 MiB	3.0 MiB

Ridiculograms