Showing only entries with tags:
Gene regulation
Tip: click on a column header to sort the list, or hover over it for a description.
Tip: click on a column header to sort the list, or hover over it for a description.
Column legend
- $\left<k\right>$
- Mean degree
- $\sigma_k$
- Standard deviation of the degrees
- $\lambda_h$
- Largest eigenvalue of the Hashimoto (non-backtracking) matrix
- $\tau$
- Random walk mixing time
- $r$
- Degree assortativity
- $c$
- Global clustering coefficient
- $\oslash$
- (Pseudo-) diameter
- $S$
- Relative size of the largest component
- $n$
- Number of networks
| Name | Title | Nodes | Edges | $\left<k\right>$ | $\sigma_k$ | $\lambda_h$ | $\tau$ | $r$ | $c$ | $\oslash$ | $S$ | Kind | Mode | $n$ | Added | Tags |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| collectri | CollecTRI human transcriptional regulation (2023) | 7,792 | 48,681 | 6.25 | 46.39 | 93.13 | 6.47 | -0.21 | 0.05 | 8 | 1.00 | Directed | Unipartite | 2 | 2026-10-27 | Biological Gene regulation Signed Unweighted Metadata |
| ecoli_ |
E. coli transcription network (2002) | 424 | 577 | 1.36 | 4.88 | 6.12 | 141.95 | -0.19 | 0.02 | 13 | 0.78 | Directed | Unipartite | 2 | 2020-08-11 | Biological Gene regulation Unweighted |
| genetic_ |
Multiplex genetic interactions (2014) | 18,222 | 170,899 | 9.38 | 100.44 | 122.68 | 14.20 | -0.06 | 0.03 | 9 | 1.00 | Directed | Unipartite | 19 | 2020-08-11 | Biological Gene regulation Protein interactions Unweighted Multilayer |
| gerstein_ |
Gerstein lab regulatory network hierarchies (2006-2010) | 4,441 | 12,873 | 2.90 | 22.04 | 30.68 | 4.17 | -0.60 | 0.01 | 6 | 1.00 | Directed | Unipartite | 10 | 2026-10-25 | Biological Gene regulation Unweighted Metadata |
| hetionet | Hetionet biomedical knowledge graph (v1.0, 2017) | 47,031 | 2,250,197 | 47.84 | 471.93 | 695.15 | 13.26 | -0.18 | 0.01 | 8 | 0.96 | Directed | Unipartite | 1 | 2026-10-27 | Biological Protein interactions Gene regulation Drug interactions Unweighted Multigraph Metadata |
| omnipath | OmniPath molecular interactions (2018-2026) | 56,444 | 2,071,155 | 36.69 | 342.36 | 451.99 | 51.80 | -0.23 | 0.06 | 12 | 0.41 | Directed | Unipartite | 24 | 2026-10-31 | Biological Protein interactions Gene regulation Signed Unweighted Multigraph Metadata |
| regulondb | RegulonDB E. coli transcriptional regulatory networks (2026) | 3,112 | 7,351 | 2.36 | 21.64 | 24.14 | 47.41 | -0.34 | 0.00 | 9 | 0.97 | Directed | Bipartite | 13 | 2026-10-27 | Biological Gene regulation Unweighted Metadata |
| signed_ |
Signed gene regulatory and signalling networks (2010) | 1,461 | 3,215 | 4.40 | 16.58 | 20.82 | 34.09 | -0.35 | 0.01 | 9 | 0.94 | Undirected | Unipartite | 4 | 2026-10-25 | Biological Gene regulation Signed |
| tflink | TFLink transcription factor-target gene interactions (2022) | 21,597 | 4,057,582 | 187.88 | 1389.20 | 1791.15 | 1.82 | -0.70 | 0.08 | 5 | 1.00 | Directed | Unipartite | 7 | 2026-10-31 | Biological Gene regulation Unweighted Metadata |
| trrust | TRRUST transcriptional regulatory networks (2018) | 2,862 | 9,396 | 3.28 | 21.30 | 31.97 | 18.62 | -0.17 | 0.04 | 9 | 0.98 | Directed | Unipartite | 2 | 2026-10-27 | Biological Gene regulation Signed Unweighted Multigraph Metadata |
| yeast_ |
Yeast causal gene regulation probabilities (2007) | 6,216 | 1,666,106 | 268.04 | 674.81 | 965.97 | 0.81 | -0.51 | 0.22 | 3 | 1.00 | Directed | Unipartite | 1 | 2026-10-25 | Biological Gene regulation Weighted Uncertain |
| yeast_ |
Yeast transcription network (2002) | 916 | 1,094 | 1.19 | 5.15 | 6.84 | 93.12 | -0.38 | 0.02 | 15 | 0.72 | Directed | Unipartite | 1 | 2020-08-11 | Biological Gene regulation Unweighted |