Showing only entries with tags:
Protein interactions
Tip: click on a column header to sort the list, or hover over it for a description.
Tip: click on a column header to sort the list, or hover over it for a description.
Column legend
- $\left<k\right>$
- Mean degree
- $\sigma_k$
- Standard deviation of the degrees
- $\lambda_h$
- Largest eigenvalue of the Hashimoto (non-backtracking) matrix
- $\tau$
- Random walk mixing time
- $r$
- Degree assortativity
- $c$
- Global clustering coefficient
- $\oslash$
- (Pseudo-) diameter
- $S$
- Relative size of the largest component
- $n$
- Number of networks
| Name | Title | Nodes | Edges | $\left<k\right>$ | $\sigma_k$ | $\lambda_h$ | $\tau$ | $r$ | $c$ | $\oslash$ | $S$ | Kind | Mode | $n$ | Tags |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| arabidopsis_interactome | Arabidopsis interactome AI-1 (2011) | 4,866 | 11,374 | 4.67 | 9.96 | 22.76 | 119.56 | -0.18 | 0.04 | 14 | 0.93 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| bioplex | BioPlex human protein co-complex interactomes (2015-2022) | 15,126 | 5,851,900 | 386.88 | 1404.76 | 2028.22 | 1.28 | -0.45 | 0.16 | 4 | 1.00 | Directed | Unipartite | 30 | Biological Protein interactions Unweighted Multigraph Metadata |
| celegans_interactomes | C. elegans interactomes (2009) | 6,176 | 178,151 | 57.69 | 123.63 | 361.03 | 114.24 | 0.16 | 0.47 | 12 | 0.97 | Undirected | Unipartite | 10 | Biological Protein interactions Unweighted |
| collins_yeast | Collins yeast interactome (2007) | 1,622 | 9,070 | 11.18 | 16.23 | 58.74 | 630.48 | 0.61 | 0.62 | 15 | 0.62 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| drosophila_flybi | Fruit fly protein interactions (Drosophila melanogaster) | 2,939 | 8,723 | 5.94 | 10.72 | 25.26 | 52.25 | -0.12 | 0.04 | 10 | 0.92 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| funcoup_cancer | Human functional gene coupling network (2014) | 19,028 | 974,427 | 102.42 | 202.80 | 602.64 | 16.29 | 0.15 | 0.28 | 8 | 0.99 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| genetic_multiplex | Multiplex genetic interactions (2014) | 18,222 | 170,899 | 9.38 | 100.44 | 122.68 | 14.20 | -0.06 | 0.03 | 9 | 1.00 | Directed | Unipartite | 19 | Biological Gene regulation Protein interactions Unweighted Multilayer |
| hetionet | Hetionet biomedical knowledge graph (v1.0, 2017) | 47,031 | 2,250,197 | 47.84 | 471.93 | 695.15 | 13.26 | -0.18 | 0.01 | 8 | 0.96 | Directed | Unipartite | 1 | Biological Protein interactions Gene regulation Drug interactions Unweighted Multigraph Metadata |
| hint_interactomes | HINT high-quality protein interactomes (2026) | 22,887 | 595,281 | 52.02 | 128.32 | 298.96 | 5.00 | -0.10 | 0.06 | 7 | 1.00 | Undirected | Unipartite | 19 | Biological Protein interactions Unweighted Metadata |
| human_interactome_2014 | Human interactome HI-II-14 and Lit-BM-13 (2014) | 5,545 | 11,045 | 3.98 | 6.24 | 14.61 | 65.59 | -0.02 | 0.04 | 15 | 0.89 | Undirected | Unipartite | 2 | Biological Protein interactions Unweighted Metadata |
| huri | Human Reference Interactome HuRI (2020) | 9,094 | 64,006 | 14.08 | 29.75 | 72.03 | 23.01 | -0.13 | 0.05 | 11 | 0.99 | Undirected | Unipartite | 9 | Biological Protein interactions Unweighted |
| intact | IntAct molecular interactions (2026) | 146,461 | 1,187,800 | 16.22 | 52.99 | 224.75 | 38614.42 | -0.04 | 0.06 | 24 | 0.93 | Undirected | Unipartite | 39 | Biological Protein interactions Weighted Multigraph Metadata |
| interactome_figeys | Figeys human interactome (2007) | 2,239 | 6,452 | 2.88 | 17.01 | 27.83 | 16.04 | -0.33 | 0.01 | 10 | 0.99 | Directed | Unipartite | 1 | Biological Protein interactions Unweighted |
| interactome_pdz | PDZ-domain interactome (2005) | 212 | 244 | 2.30 | 2.64 | 4.03 | 50.97 | -0.36 | 0.00 | 10 | 0.76 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| interactome_stelzl | Stelzl human interactome (2005) | 1,706 | 6,207 | 3.64 | 13.79 | 15.47 | 77.05 | -0.18 | 0.01 | 13 | 0.95 | Directed | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| interactome_vidal | Vidal human interactome (2005) | 3,133 | 6,726 | 4.29 | 6.88 | 13.91 | 39.11 | -0.10 | 0.04 | 13 | 0.89 | Undirected | Unipartite | 2 | Biological Protein interactions Unweighted Metadata |
| interactome_yeast | Jeong yeast interactome (2001) | 1,870 | 2,277 | 2.44 | 3.16 | 5.84 | 133.86 | -0.15 | 0.06 | 19 | 0.78 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| kinophosphatome | Human protein interactome and kino-phosphatome (2009) | 11,120 | 84,776 | 15.25 | 28.56 | 102.13 | 22.54 | 0.04 | 0.23 | 11 | 0.98 | Undirected | Unipartite | 2 | Biological Protein interactions Unweighted Metadata |
| mist | MIST protein interaction database (2020) | 109,706 | 2,864,523 | 52.22 | 102.93 | 252.64 | 5.34 | -0.10 | 0.07 | 7 | 0.15 | Undirected | Unipartite | 34 | Biological Protein interactions Unweighted |
| mosquito_ppi | Mosquito predicted protein interactions (2010) | 6,263 | 64,449 | 20.58 | 45.87 | 156.48 | 39.09 | 0.20 | 0.34 | 10 | 0.98 | Undirected | Unipartite | 1 | Biological Protein interactions Weighted Metadata |
| myocardial_inflamome | Myocardial infarction inflammation protein interactions (2011) | 2,531 | 6,131 | 4.84 | 17.55 | 28.24 | 24.11 | -0.33 | 0.02 | 10 | 1.00 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| ogbn_proteins | Protein associations of 8 species (ogbn-proteins, 2020) | 132,534 | 39,561,252 | 597.00 | 621.48 | 2291.21 | 28.57 | 0.36 | 0.28 | 10 | 1.00 | Undirected | Unipartite | 1 | Biological Protein interactions Weighted Metadata |
| reactome | Reactome human protein interactions (2014) | 6,327 | 147,547 | 46.64 | 66.81 | 207.04 | 170.67 | 0.25 | 0.61 | 24 | 0.94 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| tree-of-life | Protein interactomes across the tree of life (2019) | 16,439 | 440,135 | 53.55 | 86.94 | 258.15 | 40.94 | 0.06 | 0.36 | 9 | 1.00 | Undirected | Unipartite | 1840 | Biological Protein interactions |
| tumor_virus_host | Tumour virus-human protein interactions (2012) | 360 | 454 | 2.52 | 5.49 | 5.52 | 53.81 | -0.50 | 0.00 | 12 | 0.91 | Undirected | Bipartite | 1 | Biological Protein interactions Unweighted Metadata |
| yeast_biogrid_2007 | Yeast protein interactions (BioGRID, 2007) | 5,151 | 31,201 | 12.11 | 17.56 | 38.34 | 7.66 | -0.08 | 0.12 | 9 | 1.00 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted |
| yeast_exosome | Yeast nuclear exosome protein interactions (2006) | 44 | 106 | 4.82 | 5.95 | 9.32 | 1.87 | -0.55 | 0.44 | 4 | 1.00 | Undirected | Unipartite | 1 | Biological Protein interactions Weighted Metadata |
| yeast_interactome_ccsb | Yeast binary interactomes, CCSB (2008) | 2,018 | 2,930 | 2.90 | 4.88 | 11.19 | 44.03 | -0.04 | 0.02 | 14 | 0.82 | Undirected | Unipartite | 6 | Biological Protein interactions Unweighted |
| yeast_pin | Yeast protein interactions (2003) | 2,361 | 7,182 | 6.08 | 8.08 | 18.26 | 34.05 | -0.06 | 0.10 | 11 | 0.94 | Undirected | Unipartite | 1 | Biological Protein interactions Unweighted Metadata |
| yeast_spliceosome | Yeast spliceosome protein interactions (2017) | 103 | 4,119 | 79.98 | 24.54 | 86.49 | 0.62 | -0.02 | 0.94 | 3 | 1.00 | Undirected | Unipartite | 1 | Biological Protein interactions Weighted |